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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2223 1hkk_A)  (  417 1bkf  )     0.4451   0.4451   8.8222 (   1    5    6)   0     0.8569   0.8569    7   7
( 2223 1hkk_A)  ( 1114 1edq_A)     0.8571   0.9999   0.8622 (   0   12   15)   0     0.8571   0.9999    7   6
( 2223 1hkk_A)  ( 1243 1eq3_A)     0.2945   0.2945   7.3295 (   1    3    6)   0     0.2945   0.2945    7   7
( 2223 1hkk_A)  ( 1474 1fd9_A)     0.4455   0.3419   4.9811 (   1    5    6)   0     0.7692   0.5340    7  11
( 2223 1hkk_A)  ( 1890 1goi_A)     0.8571   0.8571   1.8674 (   0   13   15)   0     0.8571   0.8571    7   7
( 2223 1hkk_A)  ( 2223 1hkk_A)     1.0000   1.0000   0.0000 (   0   19   21)   0     1.0000   1.0000    7   7
( 2223 1hkk_A)  ( 2604 1itx_A)     0.8571   0.8571   1.1682 (   0   13   15)   0     0.8571   0.8571    7   7
( 2223 1hkk_A)  ( 2642 1ix5_A)     0.5675   0.3993  11.4596 (   0    3    6)   1     0.5675   0.3993    7  10
( 2223 1hkk_A)  ( 2992 1jnd_A)     0.8571   0.9999   1.7871 (   0   13   15)   0     0.8571   0.9999    7   6
( 2223 1hkk_A)  ( 2998 1jnt_A)     0.5713   0.6663   5.0325 (   0    4    6)   0     0.5713   0.6663    7   6
( 2223 1hkk_A)  ( 3075 1jvw_A)     0.4455   0.3419   4.7097 (   1    5    6)   0     0.7139   0.4545    7  11
( 2223 1hkk_A)  ( 3289 1kfw_A)     0.8571   0.9999   1.6647 (   0   12   15)   0     0.8571   0.9999    7   6
( 2223 1hkk_A)  ( 3423 1kt1_A)     0.2477   0.2477   7.9402 (   2    5    6)   0     0.7686   0.7686    7   7
( 2223 1hkk_A)  ( 3847 1m5y_A)     0.5940   0.5523   6.5366 (   1    7   10)   0     0.5940   0.5523    7   8
( 2223 1hkk_A)  ( 3848 1m5y_A)   nil
( 2223 1hkk_A)  ( 4690 1okg_A)     0.4453   0.4665   7.7185 (   1    5    6)   0     0.8083   0.9051    7   6
( 2223 1hkk_A)  ( 5022 1pin_A)   nil
( 2223 1hkk_A)  ( 5222 1q6h_A)     0.4455   0.3186   4.5309 (   1    5    6)   0     0.7693   0.4925    7  12
( 2223 1hkk_A)  ( 6565 3eip_A)     0.7142   0.7142   3.6943 (   0    7   10)   0     0.7142   0.7142    7   7

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