------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1007 1e2t_A) ( 635 1cmx_A) 0.2222 0.3077 7.5007 ( 0 3 6) 0 0.3888 0.5379 18 13 ( 1007 1e2t_A) ( 672 1cs8_A) 0.2222 0.2000 7.6888 ( 0 3 6) 0 0.3209 0.3039 18 20 ( 1007 1e2t_A) ( 688 1cv8 ) 0.4442 0.5706 7.6385 ( 0 23 28) 0 0.4442 0.5706 18 14 ( 1007 1e2t_A) ( 816 1deu_A) 0.2777 0.3332 10.3720 ( 0 10 10) 0 0.3333 0.3999 18 15 ( 1007 1e2t_A) ( 861 1dki_A) 0.2222 0.2353 4.4021 ( 0 5 6) 0 0.3333 0.3529 18 17 ( 1007 1e2t_A) ( 1007 1e2t_A) 1.0000 1.0000 0.0000 ( 0 124 153) 0 1.0000 1.0000 18 18 ( 1007 1e2t_A) ( 1272 1euv_A) 0.2777 0.3124 8.3507 ( 0 6 10) 0 0.3333 0.3749 18 16 ( 1007 1e2t_A) ( 1993 1gx3_A) 0.9349 0.8874 2.4346 ( 5 105 136) 0 0.9349 0.8874 18 19 ( 1007 1e2t_A) ( 2607 1iu4_A) 0.2777 0.3124 9.0124 ( 0 7 10) 0 0.2777 0.3124 18 16 ( 1007 1e2t_A) ( 3306 1khq_A) 0.2777 0.4164 8.6290 ( 0 7 10) 0 0.3887 0.5822 18 12 ( 1007 1e2t_A) ( 3912 1mdw_A) 0.2777 0.2500 10.2408 ( 0 8 10) 0 0.3525 0.3363 18 20 ( 1007 1e2t_A) ( 3914 1me4_A) 0.2777 0.3332 8.7818 ( 0 7 10) 0 0.3888 0.4664 18 15 ( 1007 1e2t_A) ( 4188 1nbf_A) 0.3085 0.2569 8.6047 ( 4 14 21) 0 0.3510 0.3208 18 25 ( 1007 1e2t_A) ( 4300 1nln_A) 0.2778 0.3846 6.0771 ( 0 5 10) 0 0.2778 0.3846 18 13 ( 1007 1e2t_A) ( 5392 1qmy_A) 0.2778 0.3846 5.8939 ( 0 7 10) 0 0.3884 0.5361 18 13 ( 1007 1e2t_A) ( 5910 1the_A) 0.2773 0.3823 9.4729 ( 1 10 10) 0 0.3229 0.4172 18 13 ( 1007 1e2t_A) ( 5970 1uch ) 0.2222 0.3077 7.9136 ( 0 5 6) 0 0.4208 0.5242 18 13 ( 1007 1e2t_A) ( 6041 1ukf_A) 0.2778 0.3846 6.5687 ( 0 7 10) 0 0.4444 0.6151 18 13 ( 1007 1e2t_A) ( 6286 1vjj_A) 0.3889 0.3043 2.6106 ( 0 16 21) 0 0.4997 0.3912 18 23 ( 1007 1e2t_A) ( 6414 2cb5_A) 0.3228 0.2207 10.0744 ( 2 11 15) 0 0.5170 0.3645 18 27 ( 1007 1e2t_A) ( 6571 3gcb ) 0.2222 0.1429 6.4393 ( 0 4 6) 0 0.3597 0.2462 18 28 -------------------------------------------------------------------------------------------------------------------------