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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3912 1mdw_A)  (  635 1cmx_A)     0.2000   0.3077   6.1647 (   0    4    6)   0     0.2910   0.4026   20  13
( 3912 1mdw_A)  (  672 1cs8_A)     0.4487   0.4487   5.6489 (   2   28   36)   0     0.4874   0.4874   20  20
( 3912 1mdw_A)  (  688 1cv8  )     0.4499   0.6422   5.0876 (   1   30   36)   0     0.4499   0.6422   20  14
( 3912 1mdw_A)  (  816 1deu_A)     0.2500   0.3333   7.2699 (   0    8   10)   0     0.3039   0.3823   20  15
( 3912 1mdw_A)  (  861 1dki_A)     0.4499   0.5291   5.4163 (   1   28   36)   0     0.4951   0.5775   20  17
( 3912 1mdw_A)  ( 1007 1e2t_A)     0.2500   0.2777  10.2408 (   0    8   10)   0     0.3363   0.3525   20  18
( 3912 1mdw_A)  ( 1272 1euv_A)     0.2500   0.3125   8.0747 (   0    7   10)   0     0.2828   0.3125   20  16
( 3912 1mdw_A)  ( 1993 1gx3_A)     0.2499   0.2631  10.9056 (   0    7   10)   0     0.3499   0.3683   20  19
( 3912 1mdw_A)  ( 2607 1iu4_A)     0.2000   0.2500   6.7428 (   0    3    6)   0     0.3899   0.4315   20  16
( 3912 1mdw_A)  ( 3306 1khq_A)     0.4908   0.7413   5.1863 (   4   38   45)   0     0.4908   0.7486   20  12
( 3912 1mdw_A)  ( 3912 1mdw_A)     1.0000   1.0000   0.0000 (   0  168  190)   0     1.0000   1.0000   20  20
( 3912 1mdw_A)  ( 3914 1me4_A)     0.3138   0.3227   5.3712 (  11   36   45)   0     0.5428   0.7051   20  15
( 3912 1mdw_A)  ( 4188 1nbf_A)     0.2000   0.1600   9.3911 (   0    5    6)   0     0.3493   0.2847   20  25
( 3912 1mdw_A)  ( 4300 1nln_A)     0.2500   0.3846   5.5215 (   0    7   10)   0     0.3000   0.4615   20  13
( 3912 1mdw_A)  ( 5392 1qmy_A)     0.3999   0.6148   6.5195 (   0   19   28)   0     0.3999   0.6148   20  13
( 3912 1mdw_A)  ( 5910 1the_A)     0.3119   0.3414   5.5509 (   6   21   28)   0     0.3274   0.3846   20  13
( 3912 1mdw_A)  ( 5970 1uch  )     0.2000   0.3077   6.9417 (   0    3    6)   0     0.3495   0.5340   20  13
( 3912 1mdw_A)  ( 6041 1ukf_A)     0.4998   0.7672   6.6676 (   0   29   45)   0     0.4998   0.7672   20  13
( 3912 1mdw_A)  ( 6286 1vjj_A)     0.2000   0.1739   6.9815 (   0    3    6)   0     0.2943   0.2718   20  23
( 3912 1mdw_A)  ( 6414 2cb5_A)     0.4874   0.3674   5.0162 (   4   35   45)   0     0.5670   0.4363   20  27
( 3912 1mdw_A)  ( 6571 3gcb  )     0.2849   0.2112   4.3450 (   3   13   15)   0     0.4945   0.4067   20  28

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