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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3914 1me4_A)  (  635 1cmx_A)     0.3975   0.4564   4.9623 (   1   10   15)   0     0.3975   0.4564   15  13
( 3914 1me4_A)  (  672 1cs8_A)     0.8608   0.6486   2.4290 (   3   64   78)   0     0.8608   0.6486   15  20
( 3914 1me4_A)  (  688 1cv8  )     0.7183   0.7648   5.2787 (   3   41   55)   0     0.7183   0.7648   15  14
( 3914 1me4_A)  (  816 1deu_A)     0.7332   0.7332   2.4546 (   1   44   55)   0     0.7332   0.7332   15  15
( 3914 1me4_A)  (  861 1dki_A)     0.6662   0.5880   4.4901 (   1   34   45)   0     0.6662   0.5880   15  17
( 3914 1me4_A)  ( 1007 1e2t_A)     0.3332   0.2777   8.7818 (   0    7   10)   0     0.4664   0.3888   15  18
( 3914 1me4_A)  ( 1272 1euv_A)     0.2667   0.2500   5.3442 (   0    2    6)   0     0.3467   0.3439   15  16
( 3914 1me4_A)  ( 1993 1gx3_A)     0.3940   0.3139   5.0342 (   1    8   15)   0     0.4000   0.3174   15  19
( 3914 1me4_A)  ( 2607 1iu4_A)     0.3489   0.3354   8.4540 (   3   13   15)   0     0.4048   0.3895   15  16
( 3914 1me4_A)  ( 3306 1khq_A)     0.7938   0.9817   1.3875 (   3   57   66)   0     0.7938   0.9817   15  12
( 3914 1me4_A)  ( 3912 1mdw_A)     0.3227   0.3138   5.3712 (  11   36   45)   0     0.7051   0.5428   15  20
( 3914 1me4_A)  ( 3914 1me4_A)     1.0000   1.0000   0.0000 (   0   93  105)   0     1.0000   1.0000   15  15
( 3914 1me4_A)  ( 4188 1nbf_A)     0.3317   0.1999   7.5152 (   1    9   10)   0     0.3991   0.2716   15  25
( 3914 1me4_A)  ( 4300 1nln_A)     0.2667   0.3077   6.3918 (   0    3    6)   0     0.2667   0.3077   15  13
( 3914 1me4_A)  ( 5392 1qmy_A)     0.5999   0.6922   3.9127 (   0   26   36)   0     0.5999   0.6922   15  13
( 3914 1me4_A)  ( 5910 1the_A)     0.7979   0.9187   3.6191 (   2   51   66)   0     0.7979   0.9187   15  13
( 3914 1me4_A)  ( 5970 1uch  )     0.3333   0.3845   7.6220 (   0    5   10)   0     0.3333   0.3845   15  13
( 3914 1me4_A)  ( 6041 1ukf_A)     0.3330   0.3840  11.9830 (   0    6   10)   0     0.3333   0.3846   15  13
( 3914 1me4_A)  ( 6286 1vjj_A)     0.2666   0.1739   8.3775 (   0    4    6)   0     0.2666   0.2120   15  23
( 3914 1me4_A)  ( 6414 2cb5_A)     0.6731   0.4035   5.7752 (   5   46   55)   0     0.6731   0.4035   15  27
( 3914 1me4_A)  ( 6571 3gcb  )     0.7235   0.3924   5.2782 (   3   46   55)   0     0.7235   0.3924   15  28

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