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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4188 1nbf_A)  (  635 1cmx_A)     0.1940   0.2980   9.9665 (   3   10   10)   0     0.4790   0.8985   25  13
( 4188 1nbf_A)  (  672 1cs8_A)     0.1912   0.2265  11.1117 (   3    9   10)   0     0.2911   0.3000   25  20
( 4188 1nbf_A)  (  688 1cv8  )     0.1600   0.2857   5.7216 (   0    4    6)   0     0.2786   0.4772   25  14
( 4188 1nbf_A)  (  816 1deu_A)     0.1970   0.3021   7.2705 (   1    4   10)   0     0.2689   0.3769   25  15
( 4188 1nbf_A)  (  861 1dki_A)     0.1730   0.1784   7.8144 (   5    9   21)   0     0.3418   0.4410   25  17
( 4188 1nbf_A)  ( 1007 1e2t_A)     0.2569   0.3085   8.6047 (   4   14   21)   0     0.3208   0.3510   25  18
( 4188 1nbf_A)  ( 1272 1euv_A)     0.1997   0.3094   9.2894 (   1    7   10)   0     0.2803   0.3660   25  16
( 4188 1nbf_A)  ( 1993 1gx3_A)     0.2395   0.3139   7.9424 (   1    8   15)   0     0.3391   0.4084   25  19
( 4188 1nbf_A)  ( 2607 1iu4_A)     0.1997   0.3095   5.3384 (   1    7   10)   0     0.2431   0.3500   25  16
( 4188 1nbf_A)  ( 3306 1khq_A)     0.3599   0.7480   6.8304 (   0   26   36)   0     0.3599   0.7480   25  12
( 4188 1nbf_A)  ( 3912 1mdw_A)     0.1600   0.2000   6.8624 (   0    5    6)   0     0.2847   0.3493   25  20
( 4188 1nbf_A)  ( 3914 1me4_A)     0.1999   0.3317   7.5152 (   1    9   10)   0     0.2716   0.3991   25  15
( 4188 1nbf_A)  ( 4188 1nbf_A)     1.0000   1.0000   0.0000 (   0  271  300)   0     1.0000   1.0000   25  25
( 4188 1nbf_A)  ( 4300 1nln_A)     0.1600   0.3077   6.8164 (   0    1    6)   0     0.2800   0.5379   25  13
( 4188 1nbf_A)  ( 5392 1qmy_A)     0.4000   0.7680   5.2708 (   1   36   45)   0     0.4000   0.7680   25  13
( 4188 1nbf_A)  ( 5910 1the_A)     0.3599   0.6908   7.1257 (   0   26   36)   0     0.3599   0.6908   25  13
( 4188 1nbf_A)  ( 5970 1uch  )     0.1600   0.3076   9.3356 (   0    4    6)   0     0.4000   0.7687   25  13
( 4188 1nbf_A)  ( 6041 1ukf_A)     0.2000   0.3846   4.4703 (   0    6   10)   0     0.3266   0.4181   25  13
( 4188 1nbf_A)  ( 6286 1vjj_A)     0.1600   0.1739   8.8172 (   0    6    6)   0     0.3113   0.3349   25  23
( 4188 1nbf_A)  ( 6414 2cb5_A)     0.2000   0.1852   7.3783 (   0    9   10)   0     0.3039   0.2954   25  27
( 4188 1nbf_A)  ( 6571 3gcb  )     0.2000   0.1786   6.8610 (   0    7   10)   0     0.3302   0.3033   25  28

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