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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4300 1nln_A)  (  635 1cmx_A)     0.3845   0.3845   8.1895 (   0    3   10)   0     0.3845   0.3845   13  13
( 4300 1nln_A)  (  672 1cs8_A)     0.3077   0.2000   7.1237 (   0    1    6)   0     0.3077   0.2359   13  20
( 4300 1nln_A)  (  688 1cv8  )     0.3077   0.2857   4.2257 (   0    1    6)   0     0.3077   0.2857   13  14
( 4300 1nln_A)  (  816 1deu_A)     0.3077   0.2667   5.7989 (   0    4    6)   0     0.3077   0.2673   13  15
( 4300 1nln_A)  (  861 1dki_A)     0.3077   0.2353   3.6231 (   0    1    6)   0     0.3576   0.3135   13  17
( 4300 1nln_A)  ( 1007 1e2t_A)     0.3846   0.2778   6.0771 (   0    5   10)   0     0.3846   0.2778   13  18
( 4300 1nln_A)  ( 1272 1euv_A)     0.6920   0.5624   4.8471 (   0   18   36)   0     0.7468   0.6167   13  16
( 4300 1nln_A)  ( 1993 1gx3_A)     0.3846   0.2632   5.8505 (   0    5   10)   0     0.3846   0.2886   13  19
( 4300 1nln_A)  ( 2607 1iu4_A)     0.3077   0.2500   7.8754 (   0    3    6)   0     0.4279   0.3618   13  16
( 4300 1nln_A)  ( 3306 1khq_A)     0.3076   0.3332   9.8309 (   0    2    6)   0     0.3076   0.3332   13  12
( 4300 1nln_A)  ( 3912 1mdw_A)     0.3846   0.2500   5.5215 (   0    7   10)   0     0.4615   0.3000   13  20
( 4300 1nln_A)  ( 3914 1me4_A)     0.3077   0.2667   6.3918 (   0    3    6)   0     0.3077   0.2667   13  15
( 4300 1nln_A)  ( 4188 1nbf_A)     0.3077   0.1600   6.8164 (   0    1    6)   0     0.5379   0.2800   13  25
( 4300 1nln_A)  ( 4300 1nln_A)     1.0000   1.0000   0.0000 (   0   55   78)   0     1.0000   1.0000   13  13
( 4300 1nln_A)  ( 5392 1qmy_A)     0.3077   0.3077   7.0127 (   0    3    6)   0     0.3846   0.3846   13  13
( 4300 1nln_A)  ( 5910 1the_A)     0.3076   0.3076   9.5185 (   0    3    6)   0     0.3076   0.3076   13  13
( 4300 1nln_A)  ( 5970 1uch  )     0.3077   0.3077   5.3644 (   0    5    6)   0     0.3846   0.3846   13  13
( 4300 1nln_A)  ( 6041 1ukf_A)     0.3077   0.3077   5.8779 (   0    1    6)   0     0.4026   0.4026   13  13
( 4300 1nln_A)  ( 6286 1vjj_A)     0.3077   0.1739   5.1480 (   0    2    6)   0     0.3845   0.2330   13  23
( 4300 1nln_A)  ( 6414 2cb5_A)     0.3076   0.1481   8.0311 (   0    2    6)   0     0.3076   0.2057   13  27
( 4300 1nln_A)  ( 6571 3gcb  )     0.3077   0.1429   7.6446 (   0    3    6)   0     0.3968   0.2435   13  28

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