-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 5392 1qmy_A)  (  635 1cmx_A)     0.3845   0.3845   8.3312 (   0    6   10)   0     0.6921   0.6921   13  13
( 5392 1qmy_A)  (  672 1cs8_A)     0.6921   0.4500   4.1679 (   0   25   36)   0     0.6921   0.4500   13  20
( 5392 1qmy_A)  (  688 1cv8  )     0.6805   0.6346   5.0644 (   2   27   36)   0     0.6805   0.6346   13  14
( 5392 1qmy_A)  (  816 1deu_A)     0.6153   0.5333   3.8907 (   0   22   28)   0     0.6153   0.5333   13  15
( 5392 1qmy_A)  (  861 1dki_A)     0.6921   0.5294   4.3912 (   0   25   36)   0     0.6921   0.5294   13  17
( 5392 1qmy_A)  ( 1007 1e2t_A)     0.3846   0.2778   5.8939 (   0    7   10)   0     0.5361   0.3884   13  18
( 5392 1qmy_A)  ( 1272 1euv_A)     0.3757   0.3092  12.0634 (   1    7   10)   0     0.4615   0.3796   13  16
( 5392 1qmy_A)  ( 1993 1gx3_A)     0.3695   0.2607  11.4170 (   1    6   10)   0     0.5076   0.3632   13  19
( 5392 1qmy_A)  ( 2607 1iu4_A)     0.2284   0.2102   8.4122 (   2    5    6)   0     0.4751   0.4111   13  16
( 5392 1qmy_A)  ( 3306 1khq_A)     0.6153   0.6666   3.4635 (   0   22   28)   0     0.6153   0.6666   13  12
( 5392 1qmy_A)  ( 3912 1mdw_A)     0.6148   0.3999   6.5195 (   0   19   28)   0     0.6148   0.3999   13  20
( 5392 1qmy_A)  ( 3914 1me4_A)     0.6922   0.5999   3.9127 (   0   26   36)   0     0.6922   0.5999   13  15
( 5392 1qmy_A)  ( 4188 1nbf_A)     0.7680   0.4000   5.2708 (   1   36   45)   0     0.7680   0.4000   13  25
( 5392 1qmy_A)  ( 4300 1nln_A)     0.3077   0.3077   7.0127 (   0    3    6)   0     0.3846   0.3846   13  13
( 5392 1qmy_A)  ( 5392 1qmy_A)     1.0000   1.0000   0.0000 (   0   65   78)   0     1.0000   1.0000   13  13
( 5392 1qmy_A)  ( 5910 1the_A)     0.3456   0.3456   7.1171 (   2    9   10)   0     0.3456   0.3456   13  13
( 5392 1qmy_A)  ( 5970 1uch  )     0.3077   0.3077   5.6462 (   0    4    6)   0     0.7599   0.7599   13  13
( 5392 1qmy_A)  ( 6041 1ukf_A)     0.4615   0.4615   5.1379 (   0   11   15)   0     0.6188   0.6188   13  13
( 5392 1qmy_A)  ( 6286 1vjj_A)     0.3076   0.1739   9.1716 (   0    5    6)   0     0.4167   0.2718   13  23
( 5392 1qmy_A)  ( 6414 2cb5_A)     0.3076   0.1481  10.0210 (   0    3    6)   0     0.4615   0.2222   13  27
( 5392 1qmy_A)  ( 6571 3gcb  )     0.3077   0.1429   7.0556 (   0    2    6)   0     0.3077   0.2266   13  28

-------------------------------------------------------------------------------------------------------------------------