------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [5910, 635]: Comparing 1the_A and 1cmx_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 18 (9 H + 9 S) secondary structure elements in 1cmx_A, of which 13 satisfy the size requirements. 3.25029 [ 3.25029] ((7 . 4) (14 . 13) (16 . 14) (17 . 15)) 7.165 {0/4:6} B:0 3.25080 [ 3.25080] ((12 . 11) (15 . 13) (16 . 14) (17 . 15)) 9.211 {0/4:6} B:0 3.25122 [ 3.25122] ((3 . 2) (11 . 13) (14 . 15) (19 . 18)) 10.246 {0/2:6} B:0 3.30597 [ 3.30597] ((4 . 2) (10 . 11) (11 . 13) (16 . 15)) 10.282 {1/6:6} B:0 3.36170 [ 3.36170] ((4 . 2) (10 . 11) (15 . 14) (16 . 15)) 9.894 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6005 [and 1/min{score2}: 0.6005] [5910, 672]: Comparing 1the_A and 1cs8_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 26 (13 H + 13 S) secondary structure elements in 1cs8_A, of which 20 satisfy the size requirements. 1.00025 [ 1.53853] ((3 . 8) (4 . 9) (7 . 12) (9 . 16) (10 . 17) (11 . 18) (12 . 19) (14 . 21) (15 . 22) (16 . 23) (17 . 24) (18 . 25) (19 . 26)) 2.851 {0/59:78} B:0 1.08356 [ 1.66673] ((3 . 8) (7 . 12) (9 . 16) (10 . 17) (11 . 18) (12 . 19) (14 . 21) (15 . 22) (16 . 23) (17 . 24) (18 . 25) (19 . 26)) 2.952 {0/48:66} B:0 2.63416 [ 4.00953] ((7 . 8) (10 . 17) (11 . 18) (12 . 19) (15 . 22)) 4.813 {1/8:10} B:0 2.70348 [ 4.02983] ((7 . 8) (10 . 17) (11 . 18) (12 . 19) (18 . 25)) 4.325 {1/6:10} B:0 3.25007 [ 5.00002] ((3 . 8) (4 . 9) (7 . 12) (9 . 18)) 5.090 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.9997 [and 1/min{score2}: 0.6500] [5910, 688]: Comparing 1the_A and 1cv8, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 14 (5 H + 9 S) secondary structure elements in 1cv8, of which 14 satisfy the size requirements. 1.39546 [ 1.45365] ((3 . 2) (4 . 3) (7 . 5) (9 . 6) (10 . 7) (11 . 8) (14 . 9) (15 . 10) (16 . 11) (17 . 12) (19 . 14)) 5.422 {5/43:55} B:0 1.52114 [ 1.61815] ((3 . 2) (4 . 3) (7 . 5) (10 . 7) (11 . 8) (14 . 9) (15 . 10) (16 . 11) (17 . 12)) 2.677 {3/30:36} B:0 1.63487 [ 1.75792] ((3 . 2) (4 . 3) (7 . 5) (9 . 6) (10 . 7) (11 . 8) (14 . 9) (19 . 14)) 5.894 {1/16:28} B:0 1.68918 [ 1.73812] ((3 . 2) (7 . 5) (9 . 6) (10 . 7) (11 . 8) (14 . 9) (15 . 10) (16 . 11) (17 . 12) (19 . 14)) 5.612 {5/33:45} B:0 1.70946 [ 1.78012] ((3 . 5) (9 . 6) (10 . 7) (11 . 8) (14 . 9) (15 . 10) (16 . 11) (17 . 12) (19 . 14)) 6.119 {4/28:36} B:0 SIMILARITY (1/min{score1}): 0.7166 [and 1/min{score2}: 0.6879] [5910, 816]: Comparing 1the_A and 1deu_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 22 (9 H + 13 S) secondary structure elements in 1deu_A, of which 15 satisfy the size requirements. 1.08343 [ 1.25006] ((3 . 3) (4 . 4) (7 . 7) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (14 . 17) (15 . 18) (16 . 19) (17 . 20) (19 . 22)) 2.357 {0/54:66} B:0 1.44681 [ 1.66821] ((7 . 3) (9 . 12) (10 . 13) (11 . 14) (12 . 15) (14 . 17) (16 . 19) (17 . 20) (19 . 22)) 4.570 {1/26:36} B:0 2.60012 [ 3.00008] ((3 . 3) (4 . 4) (7 . 7) (9 . 14) (19 . 22)) 4.842 {0/6:10} B:0 3.25024 [ 3.75015] ((4 . 3) (10 . 13) (11 . 14) (12 . 15)) 6.794 {0/3:6} B:0 3.25192 [ 3.75125] ((3 . 4) (4 . 7) (9 . 17) (16 . 22)) 11.462 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.9230 [and 1/min{score2}: 0.8000] [5910, 861]: Comparing 1the_A and 1dki_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 19 (8 H + 11 S) secondary structure elements in 1dki_A, of which 17 satisfy the size requirements. 1.30121 [ 1.70054] ((3 . 6) (4 . 10) (7 . 11) (9 . 12) (10 . 14) (11 . 15) (14 . 16) (16 . 17) (17 . 18) (19 . 19)) 5.141 {0/31:45} B:0 1.44510 [ 1.88918] ((3 . 6) (7 . 11) (9 . 12) (10 . 14) (11 . 15) (14 . 16) (16 . 17) (17 . 18) (19 . 19)) 4.774 {0/24:36} B:0 2.39656 [ 2.73408] ((3 . 6) (9 . 12) (10 . 14) (14 . 15) (16 . 17) (17 . 18) (19 . 19)) 4.697 {3/14:21} B:0 3.30537 [ 4.27518] ((12 . 14) (14 . 15) (16 . 16) (17 . 17)) 8.604 {1/6:6} B:0 3.50357 [ 4.37201] ((3 . 6) (9 . 12) (10 . 14) (11 . 16)) 7.464 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.7685 [and 1/min{score2}: 0.5880] [5910, 1007]: Comparing 1the_A and 1e2t_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 22 (9 H + 13 S) secondary structure elements in 1e2t_A, of which 18 satisfy the size requirements. 2.61583 [ 3.60600] ((12 . 5) (15 . 7) (16 . 8) (17 . 9) (19 . 11)) 9.473 {1/10:10} B:0 3.03453 [ 3.79335] ((11 . 8) (14 . 9) (15 . 11) (16 . 12) (17 . 13)) 6.846 {2/8:10} B:0 3.25009 [ 4.50003] ((11 . 7) (14 . 8) (16 . 11) (17 . 12)) 5.336 {0/5:6} B:0 3.25017 [ 4.50006] ((7 . 1) (11 . 7) (14 . 8) (16 . 9)) 6.214 {0/4:6} B:0 3.25041 [ 4.50015] ((12 . 6) (14 . 7) (16 . 8) (17 . 9)) 7.785 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4172 [and 1/min{score2}: 0.3229] [5910, 1272]: Comparing 1the_A and 1euv_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 17 (10 H + 7 S) secondary structure elements in 1euv_A, of which 16 satisfy the size requirements. 3.25012 [ 4.00006] ((9 . 6) (11 . 11) (14 . 12) (18 . 14)) 5.703 {0/2:6} B:0 3.25025 [ 4.00014] ((3 . 5) (4 . 7) (7 . 9) (11 . 13)) 6.901 {0/3:6} B:0 3.25095 [ 4.00051] ((10 . 1) (11 . 2) (14 . 3) (18 . 9)) 9.615 {0/4:6} B:0 3.50382 [ 4.14488] ((3 . 5) (4 . 7) (7 . 9) (10 . 16)) 8.772 {1/4:6} B:0 3.91569 [ 4.41377] ((3 . 5) (4 . 7) (7 . 9) (11 . 12)) 8.122 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.3077 [and 1/min{score2}: 0.2500] [5910, 1993]: Comparing 1the_A and 1gx3_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 23 (10 H + 13 S) secondary structure elements in 1gx3_A, of which 19 satisfy the size requirements. 3.25015 [ 4.75005] ((11 . 8) (14 . 9) (16 . 12) (17 . 13)) 6.070 {0/4:6} B:0 3.25046 [ 4.75015] ((12 . 6) (14 . 7) (16 . 8) (17 . 9)) 8.040 {0/4:6} B:0 3.25057 [ 4.75018] ((10 . 6) (11 . 7) (14 . 8) (17 . 12)) 8.470 {0/3:6} B:0 3.50331 [ 4.83862] ((15 . 12) (16 . 13) (17 . 14) (19 . 17)) 3.604 {1/4:6} B:0 3.50411 [ 4.83892] ((3 . 5) (4 . 6) (9 . 14) (10 . 15)) 9.771 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4614 [and 1/min{score2}: 0.3158] [5910, 2607]: Comparing 1the_A and 1iu4_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 21 (13 H + 8 S) secondary structure elements in 1iu4_A, of which 16 satisfy the size requirements. 3.25085 [ 4.00046] ((4 . 8) (7 . 9) (11 . 16) (14 . 18)) 9.358 {0/4:6} B:0 3.25248 [ 4.00133] ((3 . 9) (4 . 11) (9 . 16) (11 . 19)) 12.229 {0/4:6} B:0 3.36225 [ 4.06194] ((3 . 2) (4 . 3) (7 . 4) (10 . 9)) 11.081 {1/5:6} B:0 3.36228 [ 4.06196] ((3 . 2) (4 . 3) (10 . 9) (14 . 13)) 11.138 {1/5:6} B:0 3.50443 [ 4.14525] ((3 . 6) (15 . 16) (16 . 18) (18 . 20)) 10.636 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.3568 [and 1/min{score2}: 0.3016] [5910, 3306]: Comparing 1the_A and 1khq_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 14 (6 H + 8 S) secondary structure elements in 1khq_A, of which 12 satisfy the size requirements. 1.08874 [ 1.00685] ((3 . 2) (4 . 3) (7 . 4) (9 . 5) (10 . 6) (11 . 7) (12 . 8) (14 . 10) (16 . 11) (17 . 12) (18 . 13) (19 . 14)) 3.416 {2/50:66} B:0 3.25005 [ 3.00007] ((3 . 2) (4 . 3) (7 . 4) (9 . 7)) 4.658 {0/4:6} B:0 3.25011 [ 3.00014] ((3 . 2) (4 . 3) (7 . 4) (11 . 11)) 5.655 {0/4:6} B:0 3.30513 [ 3.06945] ((12 . 6) (14 . 7) (16 . 10) (17 . 11)) 7.511 {1/6:6} B:0 3.36153 [ 3.13927] ((4 . 4) (9 . 10) (11 . 12) (12 . 13)) 9.447 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.9185 [and 1/min{score2}: 0.9932] [5910, 3912]: Comparing 1the_A and 1mdw_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 28 (16 H + 12 S) secondary structure elements in 1mdw_A, of which 20 satisfy the size requirements. 2.11868 [ 2.68843] ((3 . 9) (9 . 18) (10 . 19) (11 . 20) (15 . 22) (16 . 23) (17 . 26) (19 . 28)) 5.408 {4/21:28} B:0 2.60011 [ 4.00003] ((4 . 10) (9 . 18) (12 . 24) (14 . 26) (19 . 28)) 4.797 {0/8:10} B:0 2.63427 [ 4.00956] ((3 . 9) (9 . 18) (10 . 19) (11 . 20) (16 . 23)) 5.675 {1/8:10} B:0 2.92926 [ 3.20653] ((3 . 9) (9 . 18) (10 . 19) (14 . 20) (15 . 22) (16 . 23) (17 . 26) (19 . 28)) 5.551 {6/21:28} B:0 3.03438 [ 4.14462] ((9 . 18) (10 . 19) (11 . 20) (15 . 22) (16 . 23)) 5.806 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.4720 [and 1/min{score2}: 0.3720] [5910, 3914]: Comparing 1the_A and 1me4_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 18 (8 H + 10 S) secondary structure elements in 1me4_A, of which 15 satisfy the size requirements. 1.08846 [ 1.25335] ((3 . 3) (4 . 4) (7 . 6) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14) (16 . 15) (17 . 16) (18 . 17) (19 . 18)) 3.619 {2/51:66} B:0 3.25006 [ 3.75004] ((3 . 3) (4 . 4) (7 . 6) (9 . 11)) 4.776 {0/4:6} B:0 3.25011 [ 3.75007] ((3 . 3) (4 . 4) (7 . 6) (11 . 15)) 5.664 {0/4:6} B:0 3.25076 [ 3.75050] ((10 . 6) (15 . 8) (16 . 9) (19 . 14)) 9.099 {0/4:6} B:0 3.30514 [ 3.78629] ((12 . 10) (14 . 11) (16 . 14) (17 . 15)) 7.586 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.9187 [and 1/min{score2}: 0.7979] [5910, 4188]: Comparing 1the_A and 1nbf_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 30 (14 H + 16 S) secondary structure elements in 1nbf_A, of which 25 satisfy the size requirements. 1.85841 [ 3.57161] ((3 . 1) (9 . 10) (11 . 22) (14 . 23) (16 . 24) (17 . 25) (19 . 27)) 6.792 {0/14:21} B:0 3.25050 [ 6.25007] ((12 . 7) (15 . 9) (18 . 11) (19 . 12)) 8.193 {0/4:6} B:0 3.25060 [ 6.25009] ((3 . 6) (11 . 22) (15 . 24) (19 . 27)) 8.589 {0/4:6} B:0 3.25069 [ 6.25010] ((3 . 4) (4 . 6) (16 . 23) (17 . 24)) 8.869 {0/6:6} B:0 3.25112 [ 6.25016] ((9 . 19) (16 . 24) (18 . 26) (19 . 27)) 10.029 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5381 [and 1/min{score2}: 0.3036] [5910, 4300]: Comparing 1the_A and 1nln_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 17 (10 H + 7 S) secondary structure elements in 1nln_A, of which 13 satisfy the size requirements. 3.25091 [ 3.25091] ((14 . 4) (16 . 5) (17 . 6) (19 . 9)) 9.518 {0/3:6} B:0 3.91593 [ 3.91593] ((7 . 1) (9 . 5) (10 . 7) (12 . 8)) 9.470 {1/3:6} B:0 5.20982 [ 5.20982] ((14 . 3) (16 . 4) (17 . 5) (19 . 6)) 9.728 {1/2:6} B:0 7.56528 [ 7.56528] ((10 . 7) (12 . 1) (16 . 5) (17 . 4)) 7.201 {3/4:6} B:2 SIMILARITY (1/min{score1}): 0.3076 [and 1/min{score2}: 0.3076] [5910, 5392]: Comparing 1the_A and 1qmy_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 15 (6 H + 9 S) secondary structure elements in 1qmy_A, of which 13 satisfy the size requirements. 2.89378 [ 2.89378] ((3 . 5) (10 . 6) (15 . 11) (16 . 12) (17 . 13)) 7.117 {2/9:10} B:0 3.25022 [ 3.25022] ((10 . 6) (15 . 11) (16 . 12) (17 . 13)) 6.655 {0/5:6} B:0 8.05395 [ 8.05395] ((10 . 5) (14 . 8) (16 . 10) (17 . 11)) 7.568 {4/5:6} B:0 8.05396 [ 8.05396] ((10 . 5) (14 . 7) (16 . 10) (17 . 11)) 8.143 {4/5:6} B:0 2.89353 [ 2.89353] ((12 . 6) (14 . 8) (15 . 12) (16 . 11) (17 . 10)) 5.560 {2/9:10} B:2 SIMILARITY (1/min{score1}): 0.3456 [and 1/min{score2}: 0.3456] [5910, 5910]: Comparing 1the_A and 1the_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. 1.00000 [ 1.00000] ((3 . 3) (4 . 4) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (19 . 19)) 0.000 {0/63:78} B:0 3.25263 [ 3.25263] ((3 . 4) (4 . 7) (11 . 14) (16 . 19)) 12.403 {0/4:6} B:0 3.25263 [ 3.25263] ((4 . 3) (7 . 4) (14 . 11) (19 . 16)) 12.403 {0/4:6} B:0 3.25356 [ 3.25356] ((3 . 4) (4 . 7) (11 . 14) (15 . 19)) 13.387 {0/4:6} B:0 1.86575 [ 1.86575] ((3 . 3) (4 . 4) (7 . 7) (10 . 10) (11 . 9) (12 . 12) (18 . 18)) 6.327 {1/15:21} B:1 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [5910, 5970]: Comparing 1the_A and 1uch, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 14 (8 H + 6 S) secondary structure elements in 1uch, of which 13 satisfy the size requirements. 3.25031 [ 3.25031] ((7 . 3) (14 . 10) (16 . 11) (17 . 12)) 7.250 {0/4:6} B:0 3.25124 [ 3.25124] ((10 . 6) (12 . 8) (16 . 10) (17 . 11)) 10.286 {0/3:6} B:0 3.36276 [ 3.36276] ((4 . 5) (7 . 6) (9 . 11) (14 . 14)) 11.924 {1/5:6} B:0 3.50383 [ 3.50383] ((7 . 1) (15 . 10) (16 . 11) (17 . 12)) 8.802 {1/4:6} B:0 6.12560 [ 6.12560] ((4 . 1) (7 . 3) (10 . 8) (14 . 10)) 12.796 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.5543 [and 1/min{score2}: 0.5543] [5910, 6041]: Comparing 1the_A and 1ukf_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 15 (7 H + 8 S) secondary structure elements in 1ukf_A, of which 13 satisfy the size requirements. 3.25038 [ 3.25038] ((3 . 3) (4 . 5) (7 . 6) (9 . 12)) 7.658 {0/4:6} B:0 3.91569 [ 3.91569] ((10 . 6) (12 . 9) (14 . 10) (16 . 11)) 8.148 {1/3:6} B:0 3.91579 [ 3.91579] ((7 . 5) (9 . 10) (11 . 12) (14 . 13)) 8.755 {1/3:6} B:0 5.20963 [ 5.20963] ((10 . 6) (11 . 8) (12 . 9) (14 . 10)) 6.491 {1/2:6} B:0 5.20977 [ 5.20977] ((4 . 3) (7 . 5) (9 . 10) (14 . 13)) 9.066 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.4749 [and 1/min{score2}: 0.4749] [5910, 6286]: Comparing 1the_A and 1vjj_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 52 (15 H + 37 S) secondary structure elements in 1vjj_A, of which 23 satisfy the size requirements. 3.25096 [ 5.75017] ((7 . 11) (10 . 17) (11 . 18) (15 . 21)) 9.654 {0/5:6} B:0 3.25685 [ 5.75124] ((4 . 22) (10 . 30) (12 . 31) (15 . 34)) 15.771 {0/4:6} B:0 3.30546 [ 5.76025] ((7 . 11) (10 . 17) (15 . 21) (17 . 23)) 8.933 {1/6:6} B:0 3.36187 [ 5.77115] ((3 . 11) (15 . 25) (17 . 26) (19 . 28)) 10.323 {1/5:6} B:0 3.36248 [ 5.77127] ((3 . 11) (9 . 21) (11 . 23) (16 . 25)) 11.491 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4072 [and 1/min{score2}: 0.2934] [5910, 6414]: Comparing 1the_A and 2cb5_A, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 34 (20 H + 14 S) secondary structure elements in 2cb5_A, of which 27 satisfy the size requirements. 1.30514 [ 2.70058] ((3 . 6) (4 . 7) (7 . 9) (9 . 18) (10 . 21) (11 . 22) (14 . 27) (16 . 28) (17 . 29) (19 . 31)) 7.388 {0/32:45} B:0 2.56732 [ 3.31037] ((4 . 6) (7 . 9) (9 . 18) (10 . 21) (11 . 22) (14 . 27) (16 . 28) (17 . 29) (19 . 31)) 6.523 {6/24:36} B:0 2.63433 [ 5.40390] ((10 . 21) (15 . 27) (16 . 28) (17 . 29) (19 . 31)) 6.049 {1/8:10} B:0 2.72278 [ 3.65126] ((4 . 6) (9 . 18) (10 . 21) (11 . 22) (14 . 27) (16 . 28) (17 . 29) (19 . 31)) 6.626 {5/19:28} B:0 3.25011 [ 6.75001] ((9 . 22) (16 . 28) (17 . 29) (19 . 31)) 5.610 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7662 [and 1/min{score2}: 0.3703] [5910, 6571]: Comparing 1the_A and 3gcb, based on their crossing files. There are 19 (10 H + 9 S) secondary structure elements in 1the_A, of which 13 satisfy the size requirements. There are 34 (20 H + 14 S) secondary structure elements in 3gcb, of which 28 satisfy the size requirements. 1.19691 [ 2.54699] ((3 . 7) (4 . 8) (7 . 10) (9 . 18) (10 . 21) (11 . 22) (14 . 27) (16 . 28) (17 . 29) (18 . 30) (19 . 31)) 6.789 {2/39:55} B:0 1.30409 [ 2.80041] ((3 . 7) (4 . 8) (7 . 10) (9 . 18) (10 . 21) (11 . 22) (14 . 27) (16 . 28) (17 . 29) (19 . 31)) 6.976 {0/33:45} B:0 1.86369 [ 3.52932] ((3 . 7) (4 . 17) (10 . 21) (11 . 22) (14 . 27) (16 . 28) (17 . 29) (19 . 31)) 6.581 {3/20:28} B:0 2.63434 [ 5.60350] ((10 . 21) (15 . 27) (16 . 28) (17 . 29) (19 . 31)) 6.079 {1/8:10} B:0 3.25024 [ 7.00002] ((9 . 20) (10 . 21) (11 . 22) (17 . 27)) 6.845 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.8355 [and 1/min{score2}: 0.3926] -------------------------------------------------------------------------------------------------------------------------