------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5970 1uch ) ( 635 1cmx_A) 0.9226 0.9226 3.6446 ( 0 51 66) 0 0.9226 0.9226 13 13 ( 5970 1uch ) ( 672 1cs8_A) 0.3076 0.2000 9.9819 ( 0 4 6) 0 0.4994 0.3966 13 20 ( 5970 1uch ) ( 688 1cv8 ) 0.3077 0.2857 6.2678 ( 0 5 6) 0 0.6375 0.6139 13 14 ( 5970 1uch ) ( 816 1deu_A) 0.3792 0.3307 10.8786 ( 1 8 10) 0 0.7551 0.6596 13 15 ( 5970 1uch ) ( 861 1dki_A) 0.3077 0.2353 5.4426 ( 0 2 6) 0 0.5707 0.4574 13 17 ( 5970 1uch ) ( 1007 1e2t_A) 0.3077 0.2222 6.6423 ( 0 4 6) 0 0.5242 0.4208 13 18 ( 5970 1uch ) ( 1272 1euv_A) 0.4609 0.3748 9.2942 ( 0 11 15) 0 0.4614 0.3749 13 16 ( 5970 1uch ) ( 1993 1gx3_A) 0.3077 0.2105 7.9208 ( 0 5 6) 0 0.3295 0.2521 13 19 ( 5970 1uch ) ( 2607 1iu4_A) 0.3845 0.3125 7.4821 ( 0 7 10) 0 0.3845 0.3438 13 16 ( 5970 1uch ) ( 3306 1khq_A) 0.3077 0.3333 7.6711 ( 0 4 6) 0 0.5788 0.6148 13 12 ( 5970 1uch ) ( 3912 1mdw_A) 0.3077 0.2000 6.9417 ( 0 3 6) 0 0.5340 0.3495 13 20 ( 5970 1uch ) ( 3914 1me4_A) 0.3845 0.3333 7.6220 ( 0 5 10) 0 0.3845 0.3333 13 15 ( 5970 1uch ) ( 4188 1nbf_A) 0.3076 0.1600 9.3356 ( 0 4 6) 0 0.7687 0.4000 13 25 ( 5970 1uch ) ( 4300 1nln_A) 0.3077 0.3077 5.3644 ( 0 5 6) 0 0.3846 0.3846 13 13 ( 5970 1uch ) ( 5392 1qmy_A) 0.3077 0.3077 5.6462 ( 0 4 6) 0 0.7599 0.7599 13 13 ( 5970 1uch ) ( 5910 1the_A) 0.3077 0.3077 7.2500 ( 0 4 6) 0 0.5543 0.5543 13 13 ( 5970 1uch ) ( 5970 1uch ) 1.0000 1.0000 0.0000 ( 0 65 78) 0 1.0000 1.0000 13 13 ( 5970 1uch ) ( 6041 1ukf_A) 0.3077 0.3077 7.6161 ( 0 5 6) 0 0.8439 0.8439 13 13 ( 5970 1uch ) ( 6286 1vjj_A) 0.3077 0.1739 6.2789 ( 0 3 6) 0 0.3762 0.2974 13 23 ( 5970 1uch ) ( 6414 2cb5_A) 0.3072 0.1481 14.6192 ( 0 5 6) 0 0.4613 0.2222 13 27 ( 5970 1uch ) ( 6571 3gcb ) 0.3073 0.1428 14.1769 ( 0 2 6) 0 0.5788 0.3370 13 28 -------------------------------------------------------------------------------------------------------------------------