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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  635 1cmx_A)  (  635 1cmx_A)     1.0000   1.0000   0.0000 (   0   62   78)   0     1.0000   1.0000   13  13
(  635 1cmx_A)  (  672 1cs8_A)     0.3077   0.2000   5.9552 (   0    4    6)   0     0.6917   0.4499   13  20
(  635 1cmx_A)  (  688 1cv8  )     0.3076   0.2857   8.5395 (   0    4    6)   0     0.6920   0.6427   13  14
(  635 1cmx_A)  (  816 1deu_A)     0.3811   0.3316  10.3865 (   1    9   10)   0     0.6107   0.5310   13  15
(  635 1cmx_A)  (  861 1dki_A)     0.3077   0.2353   4.8052 (   0    1    6)   0     0.6922   0.5294   13  17
(  635 1cmx_A)  ( 1007 1e2t_A)     0.3077   0.2222   7.5007 (   0    3    6)   0     0.5379   0.3888   13  18
(  635 1cmx_A)  ( 1272 1euv_A)     0.3076   0.2500   8.8737 (   0    3    6)   0     0.3846   0.3125   13  16
(  635 1cmx_A)  ( 1993 1gx3_A)     0.3846   0.2632   5.1316 (   0    6   10)   0     0.5326   0.3675   13  19
(  635 1cmx_A)  ( 2607 1iu4_A)     0.3845   0.3125   7.7839 (   0    7   10)   0     0.5308   0.4347   13  16
(  635 1cmx_A)  ( 3306 1khq_A)     0.3076   0.3333   8.4319 (   0    4    6)   0     0.6918   0.7493   13  12
(  635 1cmx_A)  ( 3912 1mdw_A)     0.3077   0.2000   6.9085 (   0    2    6)   0     0.4026   0.2910   13  20
(  635 1cmx_A)  ( 3914 1me4_A)     0.4564   0.3975   4.9623 (   1   10   15)   0     0.4564   0.3975   13  15
(  635 1cmx_A)  ( 4188 1nbf_A)     0.3077   0.1600   7.3063 (   0    4    6)   0     0.8985   0.4790   13  25
(  635 1cmx_A)  ( 4300 1nln_A)     0.3845   0.3845   8.1895 (   0    3   10)   0     0.6105   0.6105   13  13
(  635 1cmx_A)  ( 5392 1qmy_A)     0.3845   0.3845   8.3312 (   0    6   10)   0     0.6921   0.6921   13  13
(  635 1cmx_A)  ( 5910 1the_A)     0.3077   0.3077   7.1649 (   0    4    6)   0     0.6005   0.6005   13  13
(  635 1cmx_A)  ( 5970 1uch  )     0.9226   0.9226   3.6446 (   0   51   66)   0     0.9226   0.9226   13  13
(  635 1cmx_A)  ( 6041 1ukf_A)     0.3077   0.3077   5.9042 (   0    3    6)   0     0.7685   0.7685   13  13
(  635 1cmx_A)  ( 6286 1vjj_A)     0.3075   0.1739  11.5129 (   0    3    6)   0     0.4537   0.2604   13  23
(  635 1cmx_A)  ( 6414 2cb5_A)     0.3694   0.1848  11.9419 (   1    6   10)   0     0.4170   0.2534   13  27
(  635 1cmx_A)  ( 6571 3gcb  )     0.4172   0.2451   6.5386 (   3   14   21)   0     0.4742   0.3596   13  28

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