------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6571 3gcb ) ( 635 1cmx_A) 0.2451 0.4172 6.5386 ( 3 14 21) 0 0.3596 0.4742 28 13 ( 6571 3gcb ) ( 672 1cs8_A) 0.1785 0.2496 4.1419 ( 1 9 10) 0 0.2764 0.3020 28 20 ( 6571 3gcb ) ( 688 1cv8 ) 0.3571 0.7130 6.4764 ( 0 34 45) 0 0.3600 0.7130 28 14 ( 6571 3gcb ) ( 816 1deu_A) 0.3928 0.7313 6.9992 ( 1 43 55) 0 0.3928 0.7313 28 15 ( 6571 3gcb ) ( 861 1dki_A) 0.3571 0.5877 6.2748 ( 1 34 45) 0 0.3571 0.5877 28 17 ( 6571 3gcb ) ( 1007 1e2t_A) 0.1429 0.2222 6.4393 ( 0 4 6) 0 0.2462 0.3597 28 18 ( 6571 3gcb ) ( 1272 1euv_A) 0.1429 0.2500 6.8469 ( 0 3 6) 0 0.2451 0.3790 28 16 ( 6571 3gcb ) ( 1993 1gx3_A) 0.2022 0.2584 9.6669 ( 3 9 15) 0 0.2471 0.3500 28 19 ( 6571 3gcb ) ( 2607 1iu4_A) 0.1786 0.3122 12.3403 ( 0 8 10) 0 0.2770 0.4091 28 16 ( 6571 3gcb ) ( 3306 1khq_A) 0.3927 0.9090 5.3320 ( 2 46 55) 0 0.3927 0.9090 28 12 ( 6571 3gcb ) ( 3912 1mdw_A) 0.2112 0.2849 4.3450 ( 3 13 15) 0 0.4067 0.4945 28 20 ( 6571 3gcb ) ( 3914 1me4_A) 0.3924 0.7235 5.2782 ( 3 46 55) 0 0.3924 0.7235 28 15 ( 6571 3gcb ) ( 4188 1nbf_A) 0.1785 0.1999 6.6652 ( 1 10 10) 0 0.3033 0.3302 28 25 ( 6571 3gcb ) ( 4300 1nln_A) 0.1429 0.3076 8.8233 ( 0 3 6) 0 0.2435 0.3968 28 13 ( 6571 3gcb ) ( 5392 1qmy_A) 0.1429 0.3077 7.0556 ( 0 2 6) 0 0.2266 0.3077 28 13 ( 6571 3gcb ) ( 5910 1the_A) 0.3926 0.8355 6.7893 ( 2 39 55) 0 0.3926 0.8355 28 13 ( 6571 3gcb ) ( 5970 1uch ) 0.1428 0.3073 14.1769 ( 0 2 6) 0 0.3370 0.5788 28 13 ( 6571 3gcb ) ( 6041 1ukf_A) 0.2856 0.6114 6.7232 ( 1 16 28) 0 0.2856 0.6114 28 13 ( 6571 3gcb ) ( 6286 1vjj_A) 0.1785 0.2172 9.1501 ( 1 9 10) 0 0.3236 0.3479 28 23 ( 6571 3gcb ) ( 6414 2cb5_A) 0.9478 0.9804 1.4767 ( 15 280 351) 0 0.9478 0.9804 28 27 ( 6571 3gcb ) ( 6571 3gcb ) 1.0000 1.0000 0.0000 ( 0 310 378) 0 1.0000 1.0000 28 28 -------------------------------------------------------------------------------------------------------------------------