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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  688 1cv8  )  (  635 1cmx_A)     0.2857   0.3077   6.7654 (   0    3    6)   0     0.6427   0.6920   14  13
(  688 1cv8  )  (  672 1cs8_A)     0.7374   0.5409   4.9632 (   4   43   55)   0     0.7374   0.5409   14  20
(  688 1cv8  )  (  688 1cv8  )     1.0000   1.0000   0.0000 (   0   83   91)   0     1.0000   1.0000   14  14
(  688 1cv8  )  (  816 1deu_A)     0.6944   0.6643   4.9236 (   5   44   55)   0     0.6944   0.6643   14  15
(  688 1cv8  )  (  861 1dki_A)     0.7136   0.5880   4.1013 (   1   32   45)   0     0.7136   0.5880   14  17
(  688 1cv8  )  ( 1007 1e2t_A)     0.5706   0.4442   7.6385 (   0   23   28)   0     0.6410   0.4995   14  18
(  688 1cv8  )  ( 1272 1euv_A)     0.2857   0.2500   5.4179 (   0    5    6)   0     0.2971   0.2763   14  16
(  688 1cv8  )  ( 1993 1gx3_A)     0.3571   0.2631   7.2929 (   0    8   10)   0     0.6411   0.4733   14  19
(  688 1cv8  )  ( 2607 1iu4_A)     0.2857   0.2500   7.8520 (   0    5    6)   0     0.4998   0.4374   14  16
(  688 1cv8  )  ( 3306 1khq_A)     0.7133   0.8312   5.5689 (   1   35   45)   0     0.7133   0.8312   14  12
(  688 1cv8  )  ( 3912 1mdw_A)     0.6422   0.4499   5.0876 (   1   30   36)   0     0.6422   0.4499   14  20
(  688 1cv8  )  ( 3914 1me4_A)     0.7648   0.7183   5.2787 (   3   41   55)   0     0.7648   0.7183   14  15
(  688 1cv8  )  ( 4188 1nbf_A)     0.2857   0.1600   5.7216 (   0    4    6)   0     0.4772   0.2854   14  25
(  688 1cv8  )  ( 4300 1nln_A)     0.2857   0.3077   4.2257 (   0    1    6)   0     0.4783   0.4947   14  13
(  688 1cv8  )  ( 5392 1qmy_A)     0.6346   0.6805   5.0644 (   2   27   36)   0     0.6346   0.6805   14  13
(  688 1cv8  )  ( 5910 1the_A)     0.6879   0.7166   5.4215 (   5   43   55)   0     0.6879   0.7166   14  13
(  688 1cv8  )  ( 5970 1uch  )     0.2857   0.3077   6.2678 (   0    5    6)   0     0.6139   0.6375   14  13
(  688 1cv8  )  ( 6041 1ukf_A)     0.7127   0.7670   6.8342 (   0   31   45)   0     0.7127   0.7670   14  13
(  688 1cv8  )  ( 6286 1vjj_A)     0.2857   0.1739   7.1741 (   0    3    6)   0     0.3634   0.3045   14  23
(  688 1cv8  )  ( 6414 2cb5_A)     0.7072   0.3701   7.0470 (   2   34   45)   0     0.7072   0.3793   14  27
(  688 1cv8  )  ( 6571 3gcb  )     0.7130   0.3571   6.4764 (   0   34   45)   0     0.7130   0.3600   14  28

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