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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2819 1jc4_A)  (  611 1cjx_A)     0.9087   0.8331   3.4948 (   0   35   45)   0     0.9087   0.8331   11  12
( 2819 1jc4_A)  (  612 1cjx_A)     0.8921   0.7090   4.8060 (   2   35   45)   0     0.8921   0.7090   11  14
( 2819 1jc4_A)  ( 1105 1ecs_A)     0.4545   0.5000   2.8964 (   0    5   10)   0     0.4545   0.5000   11  10
( 2819 1jc4_A)  ( 1365 1f1u_A)     0.8163   0.8969   3.4935 (   1   27   36)   0     0.8163   0.8970   11  10
( 2819 1jc4_A)  ( 1366 1f1u_A)     0.5441   0.4991   9.2059 (   0    7   15)   0     0.8158   0.7484   11  12
( 2819 1jc4_A)  ( 1451 1f9z_A)     0.4545   0.5000   0.9338 (   0    5   10)   0     0.5735   0.5926   11  10
( 2819 1jc4_A)  ( 2819 1jc4_A)     1.0000   1.0000   0.0000 (   0   45   55)   0     1.0000   1.0000   11  11
( 2819 1jc4_A)  ( 2890 1jif_A)     0.5438   0.5438   9.8092 (   0    9   15)   0     0.5438   0.5438   11  11
( 2819 1jc4_A)  ( 3175 1k4n_A)     0.8162   0.6423   4.3296 (   1   28   36)   0     0.8162   0.6423   11  14
( 2819 1jc4_A)  ( 3347 1kll_A)     0.4545   0.4545   2.5463 (   0    4   10)   0     0.4545   0.4545   11  11
( 2819 1jc4_A)  ( 3456 1kw3_B)     0.8161   0.8967   2.6270 (   1   26   36)   0     0.8161   0.8967   11  10
( 2819 1jc4_A)  ( 3457 1kw3_B)     0.8179   0.8179   3.8507 (   0   25   36)   0     0.8179   0.8179   11  11
( 2819 1jc4_A)  ( 4006 1mpy_A)     0.6297   0.6894   3.0868 (   1   14   21)   0     0.8156   0.8958   11  10
( 2819 1jc4_A)  ( 4007 1mpy_A)     0.8181   0.6923   2.3994 (   0   25   36)   0     0.8181   0.6923   11  13
( 2819 1jc4_A)  ( 4284 1nki_A)     0.5447   0.5447   8.1228 (   0    9   15)   0     0.5447   0.5447   11  11
( 2819 1jc4_A)  ( 5349 1qip_A)     0.4545   0.3333   4.2357 (   0    6   10)   0     0.4545   0.3671   11  15
( 2819 1jc4_A)  ( 5597 1r9c_A)     0.4545   0.5000   2.4090 (   0    4   10)   0     0.4545   0.5000   11  10

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