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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2890 1jif_A)  (  611 1cjx_A)     0.4545   0.4167   3.4582 (   0    6   10)   0     0.4545   0.4292   11  12
( 2890 1jif_A)  (  612 1cjx_A)     0.4541   0.3570   8.9265 (   0    0   10)   0     0.6201   0.5311   11  14
( 2890 1jif_A)  ( 1105 1ecs_A)     0.8135   0.8926   1.2271 (   1   21   36)   0     0.9086   0.9992   11  10
( 2890 1jif_A)  ( 1365 1f1u_A)     0.5454   0.5999   4.6287 (   0    5   15)   0     0.5454   0.5999   11  10
( 2890 1jif_A)  ( 1366 1f1u_A)     0.4545   0.4167   2.2075 (   0    4   10)   0     0.4612   0.4488   11  12
( 2890 1jif_A)  ( 1451 1f9z_A)     0.8180   0.8998   3.2351 (   0   14   36)   0     0.8859   0.9637   11  10
( 2890 1jif_A)  ( 2819 1jc4_A)     0.5438   0.5438   9.8092 (   0    9   15)   0     0.5438   0.5438   11  11
( 2890 1jif_A)  ( 2890 1jif_A)     1.0000   1.0000   0.0000 (   0   36   55)   0     1.0000   1.0000   11  11
( 2890 1jif_A)  ( 3175 1k4n_A)     0.3990   0.3370   6.1955 (   1    5   10)   0     0.3990   0.3370   11  14
( 2890 1jif_A)  ( 3347 1kll_A)     0.8175   0.8175   4.6249 (   0    9   36)   0     0.8175   0.8175   11  11
( 2890 1jif_A)  ( 3456 1kw3_B)     0.4545   0.5000   2.5764 (   0    4   10)   0     0.5405   0.5655   11  10
( 2890 1jif_A)  ( 3457 1kw3_B)     0.5284   0.5284   4.2175 (   1    9   15)   0     0.6357   0.6357   11  11
( 2890 1jif_A)  ( 4006 1mpy_A)     0.4545   0.5000   2.3149 (   0    4   10)   0     0.5405   0.5654   11  10
( 2890 1jif_A)  ( 4007 1mpy_A)     0.5430   0.4605  10.7993 (   0   10   15)   0     0.5430   0.4605   11  13
( 2890 1jif_A)  ( 4284 1nki_A)     0.7112   0.7112   3.4914 (   3   24   45)   0     0.7112   0.7112   11  11
( 2890 1jif_A)  ( 5349 1qip_A)     0.9058   0.6660   4.3056 (   1   28   45)   0     0.9058   0.6660   11  15
( 2890 1jif_A)  ( 5597 1r9c_A)     0.7889   0.8546   2.3857 (   1   13   36)   0     0.7889   0.8546   11  10

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