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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3175 1k4n_A)  (  611 1cjx_A)     0.7139   0.8325   3.6389 (   1   36   45)   0     0.7139   0.8325   14  12
( 3175 1k4n_A)  (  612 1cjx_A)     0.7052   0.7052   7.5163 (   2   32   45)   0     0.7052   0.7052   14  14
( 3175 1k4n_A)  ( 1105 1ecs_A)     0.3571   0.5000   3.5340 (   0    5   10)   0     0.4530   0.5384   14  10
( 3175 1k4n_A)  ( 1365 1f1u_A)     0.7137   0.9971   4.0596 (   1   34   45)   0     0.7142   0.9994   14  10
( 3175 1k4n_A)  ( 1366 1f1u_A)     0.7134   0.8315   4.4538 (   1   30   45)   0     0.7140   0.8328   14  12
( 3175 1k4n_A)  ( 1451 1f9z_A)     0.4203   0.4717   6.8004 (   2   10   21)   0     0.4203   0.5000   14  10
( 3175 1k4n_A)  ( 2819 1jc4_A)     0.6423   0.8162   4.3296 (   1   28   36)   0     0.6423   0.8162   14  11
( 3175 1k4n_A)  ( 2890 1jif_A)     0.3370   0.3990   6.1955 (   1    5   10)   0     0.3370   0.3990   14  11
( 3175 1k4n_A)  ( 3175 1k4n_A)     1.0000   1.0000   0.0000 (   0   78   91)   0     1.0000   1.0000   14  14
( 3175 1k4n_A)  ( 3347 1kll_A)     0.3846   0.4373   7.2664 (   1    5   15)   0     0.4146   0.4545   14  11
( 3175 1k4n_A)  ( 3456 1kw3_B)     0.6347   0.8596   4.4329 (   2   27   36)   0     0.6427   0.8993   14  10
( 3175 1k4n_A)  ( 3457 1kw3_B)     0.7128   0.9043   6.7302 (   0   31   45)   0     0.7128   0.9043   14  11
( 3175 1k4n_A)  ( 4006 1mpy_A)     0.7079   0.9677   4.3562 (   2   33   45)   0     0.7141   0.9991   14  10
( 3175 1k4n_A)  ( 4007 1mpy_A)     0.7140   0.7688   4.4059 (   0   30   45)   0     0.7140   0.7688   14  13
( 3175 1k4n_A)  ( 4284 1nki_A)     0.3571   0.4545   3.3669 (   0    5   10)   0     0.4232   0.5283   14  11
( 3175 1k4n_A)  ( 5349 1qip_A)     0.3568   0.3331  10.7297 (   0    6   10)   0     0.3568   0.3436   14  15
( 3175 1k4n_A)  ( 5597 1r9c_A)     0.3571   0.5000   3.1292 (   0    4   10)   0     0.3571   0.5000   14  10

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