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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3347 1kll_A)  (  611 1cjx_A)     0.4545   0.4167   3.6573 (   0    4   10)   0     0.4545   0.4167   11  12
( 3347 1kll_A)  (  612 1cjx_A)     0.4542   0.3570   8.2849 (   0    2   10)   0     0.4542   0.3847   11  14
( 3347 1kll_A)  ( 1105 1ecs_A)     0.8181   0.8998   3.0322 (   0    9   36)   0     0.8181   0.8998   11  10
( 3347 1kll_A)  ( 1365 1f1u_A)     0.4545   0.5000   2.8135 (   0    4   10)   0     0.4545   0.5000   11  10
( 3347 1kll_A)  ( 1366 1f1u_A)     0.4545   0.4167   2.6103 (   0    4   10)   0     0.4545   0.4167   11  12
( 3347 1kll_A)  ( 1451 1f9z_A)     0.8181   0.8999   2.7085 (   0   13   36)   0     0.8181   0.8999   11  10
( 3347 1kll_A)  ( 2819 1jc4_A)     0.4545   0.4545   2.5463 (   0    4   10)   0     0.4545   0.4545   11  11
( 3347 1kll_A)  ( 2890 1jif_A)     0.8175   0.8175   4.6249 (   0    9   36)   0     0.8175   0.8175   11  11
( 3347 1kll_A)  ( 3175 1k4n_A)     0.4545   0.3571   3.9064 (   0    3   10)   0     0.4545   0.4146   11  14
( 3347 1kll_A)  ( 3347 1kll_A)     1.0000   1.0000   0.0000 (   0   29   55)   0     1.0000   1.0000   11  11
( 3347 1kll_A)  ( 3456 1kw3_B)     0.4545   0.5000   3.1153 (   0    3   10)   0     0.4786   0.5042   11  10
( 3347 1kll_A)  ( 3457 1kw3_B)     0.4545   0.4545   4.2665 (   0    3   10)   0     0.4545   0.4545   11  11
( 3347 1kll_A)  ( 4006 1mpy_A)     0.4545   0.5000   3.6137 (   0    3   10)   0     0.4545   0.5000   11  10
( 3347 1kll_A)  ( 4007 1mpy_A)     0.4545   0.3846   2.3838 (   0    4   10)   0     0.4545   0.3846   11  13
( 3347 1kll_A)  ( 4284 1nki_A)     0.7651   0.7651   3.7776 (   1   11   36)   0     0.7784   0.7784   11  11
( 3347 1kll_A)  ( 5349 1qip_A)     0.8179   0.5999   3.8755 (   0   13   36)   0     0.8179   0.5999   11  15
( 3347 1kll_A)  ( 5597 1r9c_A)     0.6837   0.7341   3.6436 (   1   10   28)   0     0.7648   0.8197   11  10

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