-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 3456 1kw3_B)  (  611 1cjx_A)     0.8975   0.7490   2.8966 (   1   28   36)   0     0.8975   0.7490   10  12
( 3456 1kw3_B)  (  612 1cjx_A)     0.8936   0.6416   5.9111 (   1   25   36)   0     0.9817   0.7108   10  14
( 3456 1kw3_B)  ( 1105 1ecs_A)     0.5988   0.5988   8.0603 (   0   10   15)   0     0.5999   0.5999   10  10
( 3456 1kw3_B)  ( 1365 1f1u_A)     0.8976   0.8976   1.9695 (   1   28   36)   0     0.8998   0.8998   10  10
( 3456 1kw3_B)  ( 1366 1f1u_A)     0.9000   0.7500   1.7236 (   0   24   36)   0     0.9000   0.7500   10  12
( 3456 1kw3_B)  ( 1451 1f9z_A)     0.5000   0.5000   2.5460 (   0    4   10)   0     0.5992   0.5992   10  10
( 3456 1kw3_B)  ( 2819 1jc4_A)     0.8967   0.8161   2.6270 (   1   26   36)   0     0.8967   0.8161   10  11
( 3456 1kw3_B)  ( 2890 1jif_A)     0.5000   0.4545   2.5764 (   0    4   10)   0     0.5655   0.5405   10  11
( 3456 1kw3_B)  ( 3175 1k4n_A)     0.8596   0.6347   4.4329 (   2   27   36)   0     0.8993   0.6427   10  14
( 3456 1kw3_B)  ( 3347 1kll_A)     0.5000   0.4545   3.1153 (   0    3   10)   0     0.5042   0.4786   10  11
( 3456 1kw3_B)  ( 3456 1kw3_B)     1.0000   1.0000   0.0000 (   0   36   45)   0     1.0000   1.0000   10  10
( 3456 1kw3_B)  ( 3457 1kw3_B)     0.8993   0.8178   4.1241 (   0   24   36)   0     0.8993   0.8178   10  11
( 3456 1kw3_B)  ( 4006 1mpy_A)     0.9000   0.9000   1.6413 (   0   27   36)   0     0.9000   0.9000   10  10
( 3456 1kw3_B)  ( 4007 1mpy_A)     0.8956   0.6911   1.5633 (   1   24   36)   0     0.8998   0.6922   10  13
( 3456 1kw3_B)  ( 4284 1nki_A)     0.5000   0.4545   2.4531 (   0    4   10)   0     0.5000   0.4545   10  11
( 3456 1kw3_B)  ( 5349 1qip_A)     0.5995   0.3999   6.4514 (   0    4   15)   0     0.5995   0.3999   10  15
( 3456 1kw3_B)  ( 5597 1r9c_A)     0.5000   0.5000   1.9063 (   0    4   10)   0     0.5995   0.5995   10  10

-------------------------------------------------------------------------------------------------------------------------