-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 3457 1kw3_B)  (  611 1cjx_A)     0.8175   0.7496   4.6722 (   0   24   36)   0     0.8175   0.7496   11  12
( 3457 1kw3_B)  (  612 1cjx_A)     0.9053   0.7132   5.5832 (   1   32   45)   0     0.9055   0.7132   11  14
( 3457 1kw3_B)  ( 1105 1ecs_A)     0.5444   0.5983   8.7663 (   0    9   15)   0     0.5453   0.5998   11  10
( 3457 1kw3_B)  ( 1365 1f1u_A)     0.8173   0.8986   5.0407 (   0   25   36)   0     0.8174   0.8987   11  10
( 3457 1kw3_B)  ( 1366 1f1u_A)     0.9080   0.8326   4.6540 (   0   29   45)   0     0.9080   0.8326   11  12
( 3457 1kw3_B)  ( 1451 1f9z_A)     0.4545   0.5000   4.0829 (   0    3   10)   0     0.4545   0.5000   11  10
( 3457 1kw3_B)  ( 2819 1jc4_A)     0.8179   0.8179   3.8507 (   0   25   36)   0     0.8179   0.8179   11  11
( 3457 1kw3_B)  ( 2890 1jif_A)     0.5284   0.5284   4.2175 (   1    9   15)   0     0.6357   0.6357   11  11
( 3457 1kw3_B)  ( 3175 1k4n_A)     0.9043   0.7128   6.7302 (   0   31   45)   0     0.9043   0.7128   11  14
( 3457 1kw3_B)  ( 3347 1kll_A)     0.4545   0.4545   4.2665 (   0    3   10)   0     0.4545   0.4545   11  11
( 3457 1kw3_B)  ( 3456 1kw3_B)     0.8178   0.8993   4.1241 (   0   24   36)   0     0.8178   0.8993   11  10
( 3457 1kw3_B)  ( 3457 1kw3_B)     1.0000   1.0000   0.0000 (   0   43   55)   0     1.0000   1.0000   11  11
( 3457 1kw3_B)  ( 4006 1mpy_A)     0.9068   0.9963   5.5985 (   0   32   45)   0     0.9068   0.9963   11  10
( 3457 1kw3_B)  ( 4007 1mpy_A)     0.8180   0.6922   3.5771 (   0   23   36)   0     0.8180   0.6922   11  13
( 3457 1kw3_B)  ( 4284 1nki_A)     0.4545   0.4545   4.3084 (   0    5   10)   0     0.5448   0.5448   11  11
( 3457 1kw3_B)  ( 5349 1qip_A)     0.4545   0.3333   4.1084 (   0    5   10)   0     0.4611   0.4051   11  15
( 3457 1kw3_B)  ( 5597 1r9c_A)     0.4545   0.5000   4.0112 (   0    4   10)   0     0.5585   0.5997   11  10

-------------------------------------------------------------------------------------------------------------------------