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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4006 1mpy_A)  (  611 1cjx_A)     0.8971   0.7488   2.6471 (   1   27   36)   0     0.8997   0.7499   10  12
( 4006 1mpy_A)  (  612 1cjx_A)     0.9866   0.7117   7.3579 (   1   31   45)   0     0.9866   0.7117   10  14
( 4006 1mpy_A)  ( 1105 1ecs_A)     0.7845   0.7845   8.4652 (   1   17   28)   0     0.7845   0.7845   10  10
( 4006 1mpy_A)  ( 1365 1f1u_A)     0.9981   0.9981   1.2751 (   1   34   45)   0     0.9995   0.9995   10  10
( 4006 1mpy_A)  ( 1366 1f1u_A)     0.9999   0.8333   2.3236 (   0   29   45)   0     0.9999   0.8333   10  12
( 4006 1mpy_A)  ( 1451 1f9z_A)     0.5384   0.5384   5.6572 (   1    7   15)   0     0.5384   0.5384   10  10
( 4006 1mpy_A)  ( 2819 1jc4_A)     0.8960   0.8157   3.4352 (   1   25   36)   0     0.8960   0.8157   10  11
( 4006 1mpy_A)  ( 2890 1jif_A)     0.5000   0.4545   2.3149 (   0    4   10)   0     0.5654   0.5405   10  11
( 4006 1mpy_A)  ( 3175 1k4n_A)     0.9677   0.7079   4.3562 (   2   33   45)   0     0.9991   0.7141   10  14
( 4006 1mpy_A)  ( 3347 1kll_A)     0.5000   0.4545   3.6137 (   0    3   10)   0     0.5000   0.4545   10  11
( 4006 1mpy_A)  ( 3456 1kw3_B)     0.9000   0.9000   1.6413 (   0   27   36)   0     0.9000   0.9000   10  10
( 4006 1mpy_A)  ( 3457 1kw3_B)     0.8987   0.8174   4.9044 (   0   24   36)   0     0.8987   0.8174   10  11
( 4006 1mpy_A)  ( 4006 1mpy_A)     1.0000   1.0000   0.0000 (   0   36   45)   0     1.0000   1.0000   10  10
( 4006 1mpy_A)  ( 4007 1mpy_A)     0.9964   0.7682   2.3694 (   1   29   45)   0     0.9993   0.7690   10  13
( 4006 1mpy_A)  ( 4284 1nki_A)     0.5000   0.4545   2.8347 (   0    6   10)   0     0.5041   0.4786   10  11
( 4006 1mpy_A)  ( 5349 1qip_A)     0.5000   0.3333   3.7783 (   0    4   10)   0     0.5000   0.3333   10  15
( 4006 1mpy_A)  ( 5597 1r9c_A)     0.5385   0.5385   5.4060 (   1    7   15)   0     0.5385   0.5385   10  10

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