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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4007 1mpy_A)  (  611 1cjx_A)     0.6922   0.7499   3.1401 (   0   24   36)   0     0.6922   0.7499   13  12
( 4007 1mpy_A)  (  612 1cjx_A)     0.8334   0.7768   6.4608 (   2   36   55)   0     0.8334   0.7768   13  14
( 4007 1mpy_A)  ( 1105 1ecs_A)     0.4530   0.5708  10.4215 (   1    9   15)   0     0.6149   0.7981   13  10
( 4007 1mpy_A)  ( 1365 1f1u_A)     0.7685   0.9972   2.4214 (   1   31   45)   0     0.7691   0.9995   13  10
( 4007 1mpy_A)  ( 1366 1f1u_A)     0.9228   0.9995   0.8532 (   1   48   66)   0     0.9228   0.9995   13  12
( 4007 1mpy_A)  ( 1451 1f9z_A)     0.4605   0.5963  10.5748 (   0    7   15)   0     0.4605   0.5963   13  10
( 4007 1mpy_A)  ( 2819 1jc4_A)     0.6923   0.8181   2.3994 (   0   25   36)   0     0.6923   0.8181   13  11
( 4007 1mpy_A)  ( 2890 1jif_A)     0.4605   0.5430  10.7993 (   0   10   15)   0     0.4605   0.5430   13  11
( 4007 1mpy_A)  ( 3175 1k4n_A)     0.7688   0.7140   4.4059 (   0   30   45)   0     0.7688   0.7140   13  14
( 4007 1mpy_A)  ( 3347 1kll_A)     0.3846   0.4545   2.3838 (   0    4   10)   0     0.3846   0.4545   13  11
( 4007 1mpy_A)  ( 3456 1kw3_B)     0.6911   0.8956   1.5633 (   1   24   36)   0     0.6922   0.8998   13  10
( 4007 1mpy_A)  ( 3457 1kw3_B)     0.6922   0.8180   3.5771 (   0   23   36)   0     0.6922   0.8180   13  11
( 4007 1mpy_A)  ( 4006 1mpy_A)     0.7682   0.9964   2.3694 (   1   29   45)   0     0.7690   0.9993   13  10
( 4007 1mpy_A)  ( 4007 1mpy_A)     1.0000   1.0000   0.0000 (   0   60   78)   0     1.0000   1.0000   13  13
( 4007 1mpy_A)  ( 4284 1nki_A)     0.3763   0.4363   5.3020 (   1    7   10)   0     0.4223   0.4363   13  11
( 4007 1mpy_A)  ( 5349 1qip_A)     0.3846   0.3333   2.0875 (   0    2   10)   0     0.4101   0.3958   13  15
( 4007 1mpy_A)  ( 5597 1r9c_A)     0.3846   0.5000   2.2606 (   0    3   10)   0     0.3846   0.5000   13  10

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