-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 5597 1r9c_A)  (  611 1cjx_A)     0.5576   0.4813  10.5735 (   1    8   15)   0     0.5576   0.4813   10  12
( 5597 1r9c_A)  (  612 1cjx_A)     0.4000   0.2857   5.0316 (   0    0    6)   0     0.5967   0.4280   10  14
( 5597 1r9c_A)  ( 1105 1ecs_A)     0.8546   0.8546   2.3301 (   1   13   36)   0     0.8546   0.8546   10  10
( 5597 1r9c_A)  ( 1365 1f1u_A)     0.5000   0.5000   2.3227 (   0    4   10)   0     0.5000   0.5000   10  10
( 5597 1r9c_A)  ( 1366 1f1u_A)     0.5000   0.4167   2.2393 (   0    2   10)   0     0.5000   0.4663   10  12
( 5597 1r9c_A)  ( 1451 1f9z_A)     0.8651   0.8651   2.9104 (   1   14   36)   0     0.8651   0.8651   10  10
( 5597 1r9c_A)  ( 2819 1jc4_A)     0.5000   0.4545   2.4090 (   0    4   10)   0     0.5000   0.4545   10  11
( 5597 1r9c_A)  ( 2890 1jif_A)     0.8546   0.7889   2.3857 (   1   13   36)   0     0.8546   0.7889   10  11
( 5597 1r9c_A)  ( 3175 1k4n_A)     0.5000   0.3571   3.1292 (   0    4   10)   0     0.5000   0.3571   10  14
( 5597 1r9c_A)  ( 3347 1kll_A)     0.7341   0.6837   3.6436 (   1   10   28)   0     0.8197   0.7648   10  11
( 5597 1r9c_A)  ( 3456 1kw3_B)     0.5000   0.5000   1.9063 (   0    4   10)   0     0.5995   0.5995   10  10
( 5597 1r9c_A)  ( 3457 1kw3_B)     0.5000   0.4545   4.0112 (   0    4   10)   0     0.5000   0.4545   10  11
( 5597 1r9c_A)  ( 4006 1mpy_A)     0.5385   0.5385   5.4060 (   1    7   15)   0     0.5385   0.5385   10  10
( 5597 1r9c_A)  ( 4007 1mpy_A)     0.5000   0.3846   2.2606 (   0    3   10)   0     0.5000   0.3846   10  13
( 5597 1r9c_A)  ( 4284 1nki_A)     0.9999   0.9091   1.4882 (   0   22   45)   0     0.9999   0.9091   10  11
( 5597 1r9c_A)  ( 5349 1qip_A)     0.9061   0.6516   2.9949 (   2   24   45)   0     0.9061   0.6516   10  15
( 5597 1r9c_A)  ( 5597 1r9c_A)     1.0000   1.0000   0.0000 (   0   25   45)   0     1.0000   1.0000   10  10

-------------------------------------------------------------------------------------------------------------------------