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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  470 1buo_A)  (  470 1buo_A)     1.0000   1.0000   0.0000 (   0   32   36)   0     1.0000   1.0000    9   9
(  470 1buo_A)  ( 2297 1hv2_A)     0.7777   0.9998   2.6928 (   0   18   21)   0     0.7777   0.9998    9   7
(  470 1buo_A)  ( 3663 1lm8_C)     0.7777   0.9998   2.5431 (   0   17   21)   0     0.7777   0.9998    9   7
(  470 1buo_A)  ( 4319 1nn7_A)     0.7711   0.8631   2.5094 (   1   18   21)   0     0.7711   0.8631    9   8
(  470 1buo_A)  ( 5529 1r29_A)     0.9969   0.9969   1.3817 (   1   30   36)   0     0.9969   0.9969    9   9
(  470 1buo_A)  ( 5875 1t1d_A)     0.7643   0.8513   2.3854 (   1   15   21)   0     0.7643   0.8513    9   8
(  470 1buo_A)  ( 6575 3kvt  )     0.6667   0.9999   1.5805 (   0   11   15)   0     0.6667   0.9999    9   6

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