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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3359 1kn0_A)  (  915 1dq3_A)     0.3998   0.5705   8.0127 (   0    1    6)   0     0.4993   0.7099   10   7
( 3359 1kn0_A)  ( 3359 1kn0_A)     1.0000   1.0000   0.0000 (   0   34   45)   0     1.0000   1.0000   10  10
( 3359 1kn0_A)  ( 4983 1pda  )     0.1987   0.1998   8.4756 (   1    2   10)   0     0.1987   0.1998   10   6

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