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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4864 1p1j_A)  (  313 1b7g_O)     0.6665   0.5454   3.9945 (   0    5   15)   0     0.6665   0.5454    9  11
( 4864 1p1j_A)  (  848 1dih  )     0.6665   0.8565   4.2907 (   0    0   15)   0     0.6665   0.8565    9   7
( 4864 1p1j_A)  (  907 1dpg_A)     0.5499   0.2499  13.0100 (   0    4   10)   0     0.7340   0.3491    9  20
( 4864 1p1j_A)  ( 1095 1ebf_A)     0.4443   0.3077   6.5119 (   0    0    6)   0     0.4443   0.4073    9  13
( 4864 1p1j_A)  ( 1488 1ff9_A)     0.7769   0.4374   5.3998 (   0    9   21)   0     0.7769   0.4374    9  16
( 4864 1p1j_A)  ( 1923 1gr0_A)     0.7354   0.8041   3.5866 (   1   11   21)   0     0.7354   0.8041    9   8
( 4864 1p1j_A)  ( 2096 1h6d_A)     0.6665   0.5454   4.3984 (   0    2   15)   0     0.6665   0.5848    9  11
( 4864 1p1j_A)  ( 2737 1j5p_A)     0.7769   0.7769   5.2976 (   0    2   21)   0     0.7769   0.7769    9   9
( 4864 1p1j_A)  ( 3594 1lc0_A)     0.5555   0.6248   4.5571 (   0    1   10)   0     0.5555   0.6250    9   8
( 4864 1p1j_A)  ( 4405 1nvm_B)     0.6666   0.5454   3.7020 (   0    4   15)   0     0.6666   0.5454    9  11
( 4864 1p1j_A)  ( 4418 1nwc_A)     0.5549   0.3125   7.6448 (   0    2   10)   0     0.5549   0.3317    9  16
( 4864 1p1j_A)  ( 4589 1obf_O)     0.6665   0.4615   3.9602 (   0    0   15)   0     0.6665   0.4615    9  13
( 4864 1p1j_A)  ( 4731 1ono_A)     0.7769   0.5831   5.3481 (   0    9   21)   0     0.7769   0.5831    9  12
( 4864 1p1j_A)  ( 4864 1p1j_A)     1.0000   1.0000   0.0000 (   0   21   36)   0     1.0000   1.0000    9   9
( 4864 1p1j_A)  ( 4944 1p9l_A)     0.6665   0.7498   3.9933 (   0    0   15)   0     0.6665   0.7498    9   8
( 4864 1p1j_A)  ( 5363 1qki_A)     0.5560   0.3916   5.5533 (   1    6   21)   0     0.6663   0.3916    9  17
( 4864 1p1j_A)  ( 6293 1vjp_A)     0.7777   0.8748   3.2576 (   0   10   21)   0     0.7777   0.8748    9   8
( 4864 1p1j_A)  ( 6427 2dap  )     0.4433   0.3632  11.3644 (   0    0    6)   0     0.5527   0.4535    9  11

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