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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4944 1p9l_A)  (  313 1b7g_O)     0.7498   0.5454   3.6243 (   0    3   15)   0     0.7498   0.6016    8  11
( 4944 1p9l_A)  (  848 1dih  )     0.7797   0.8409   1.9565 (   1   10   21)   0     0.7797   0.8409    8   7
( 4944 1p9l_A)  (  907 1dpg_A)     0.8745   0.3500   4.0721 (   0    3   21)   0     0.8745   0.3500    8  20
( 4944 1p9l_A)  ( 1095 1ebf_A)     0.6206   0.3842  10.5342 (   0    2   10)   0     0.6206   0.3842    8  13
( 4944 1p9l_A)  ( 1488 1ff9_A)     0.7496   0.3750   4.6540 (   0    3   15)   0     0.7496   0.3750    8  16
( 4944 1p9l_A)  ( 1923 1gr0_A)     0.5143   0.5143   6.5408 (   1    6   10)   0     0.6074   0.6074    8   8
( 4944 1p9l_A)  ( 2096 1h6d_A)     0.8741   0.6362   4.6644 (   0    3   21)   0     0.8741   0.6362    8  11
( 4944 1p9l_A)  ( 2737 1j5p_A)     0.7499   0.6666   3.3776 (   0    2   15)   0     0.7499   0.6666    8   9
( 4944 1p9l_A)  ( 3594 1lc0_A)     0.7496   0.7496   4.4789 (   0    1   15)   0     0.7496   0.7496    8   8
( 4944 1p9l_A)  ( 4405 1nvm_B)     0.7498   0.5454   3.9832 (   0    3   15)   0     0.7498   0.5454    8  11
( 4944 1p9l_A)  ( 4418 1nwc_A)     0.6215   0.3124   9.9437 (   0    4   10)   0     0.8727   0.4374    8  16
( 4944 1p9l_A)  ( 4589 1obf_O)     0.4999   0.3077   5.3431 (   0    0    6)   0     0.7495   0.5224    8  13
( 4944 1p9l_A)  ( 4731 1ono_A)     0.7496   0.5000   4.4752 (   0    4   15)   0     0.7496   0.5000    8  12
( 4944 1p9l_A)  ( 4864 1p1j_A)     0.7498   0.6665   3.9933 (   0    0   15)   0     0.7498   0.6665    8   9
( 4944 1p9l_A)  ( 4944 1p9l_A)     1.0000   1.0000   0.0000 (   0   16   28)   0     1.0000   1.0000    8   8
( 4944 1p9l_A)  ( 5363 1qki_A)     0.8745   0.4118   3.9531 (   0    6   21)   0     0.8745   0.4118    8  17
( 4944 1p9l_A)  ( 6293 1vjp_A)     0.2981   0.2981   3.8810 (   2    6   15)   0     0.4988   0.4988    8   8
( 4944 1p9l_A)  ( 6427 2dap  )     0.4982   0.3633  11.0395 (   0    2    6)   0     0.4982   0.3633    8  11

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