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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4681 1ojt  )  (  768 1d7y_A)     0.6999   0.8747   3.4101 (   0    2   21)   0     0.6999   0.8747   10   8
( 4681 1ojt  )  ( 1480 1fec_A)     0.9649   0.8186   2.9516 (   1   16   45)   0     0.9649   0.8186   10  12
( 4681 1ojt  )  ( 1585 1fo4_A)     0.5997   0.9960   5.7058 (   0    5   15)   0     0.5997   0.9960   10   6
( 4681 1ojt  )  ( 2114 1h6v_A)     0.9773   0.8948   2.7076 (   1   18   45)   0     0.9773   0.8948   10  11
( 4681 1ojt  )  ( 3037 1jro_A)     0.5996   0.9944   6.2054 (   0    6   15)   0     0.5996   0.9944   10   6
( 4681 1ojt  )  ( 3861 1m6i_A)     0.6998   0.8744   4.1450 (   0    6   21)   0     0.6998   0.8744   10   8
( 4681 1ojt  )  ( 3991 1mo9_A)     0.8998   0.8181   2.9801 (   0   15   36)   0     0.8998   0.8181   10  11
( 4681 1ojt  )  ( 4140 1n62_C)     0.5598   0.7330   6.1832 (   1    8   15)   0     0.5598   0.7330   10   6
( 4681 1ojt  )  ( 4259 1nhp  )     0.8997   0.9996   3.2856 (   0   15   36)   0     0.8997   0.9996   10   9
( 4681 1ojt  )  ( 4681 1ojt  )     1.0000   1.0000   0.0000 (   0   25   45)   0     1.0000   1.0000   10  10
( 4681 1ojt  )  ( 5183 1q1r_A)     0.6999   0.8747   3.5953 (   0    1   21)   0     0.6999   0.8747   10   8
( 4681 1ojt  )  ( 6574 3grs  )     0.4000   0.4000   5.5626 (   0    2    6)   0     0.5998   0.5998   10  10
( 4681 1ojt  )  ( 6578 3lad_A)     0.8780   0.8780   1.2618 (   2   22   45)   0     0.8780   0.8780   10  10

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