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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2744 1j5y_A)  ( 2744 1j5y_A)     1.0000   1.0000   0.0000 (   0   22   28)   0     1.0000   1.0000    8   8
( 2744 1j5y_A)  ( 4746 1opd  )     0.8740   0.9980   4.7729 (   0   10   21)   0     0.8740   0.9980    8   7
( 2744 1j5y_A)  ( 4975 1pch  )     0.8739   0.9978   4.9211 (   0   10   21)   0     0.8739   0.9978    8   7
( 2744 1j5y_A)  ( 5105 1ptf  )     0.8741   0.9983   4.6031 (   0   10   21)   0     0.8741   0.9983    8   7

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