Refereed Publications

  • Narayanan Raghupathy, Rose Hoberman, and Dannie Durand.
    Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison. To appear in the Journal of Bioinformatics and Computational Biology, 2007.
    Paper: pdf to be available shortly

  • Dannie Durand and Rose Hoberman.
    Diagnosing Gene Duplications: Can it be Done?
    Trends in Genetics, 2006; 22(3), 156-164.
    Paper: (pubmed, pdf, full text)

  • Rose Hoberman and Dannie Durand.
    The Incompatible Desiderata of Gene Cluster Properties
    In Proceedings of the 3rd RECOMB Workshop on Comparative Genomics (Mclysaght and Huson, eds.), Lecture Notes in Bioinformatics, Springer-Verlag. Volume 3678, 2005; pp. 73-87.
    Paper: (abstract, pdf)     Presentation: (pdf)

  • Rose Hoberman, David Sankoff, and Dannie Durand.
    The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion
    Journal of Computational Biology, 2005; 12(8), 1083-1101.
    Paper: (pubmed, pdf)

  • Rose Hoberman, David Sankoff, and Dannie Durand.
    The Statistical Significance of Max-Gap Clusters
    In Proceedings of the 2nd RECOMB Workshop on Comparative Genomics (Lagergren, ed.), Lecture Notes in Bioinformatics, Springer-Verlag. Volume 3388, Jan 2005, pp. 55-71.
    Paper: (abstract, pdf)     Presentation: (ppt)

  • Rose Hoberman, Judith Klein-Seetharaman, and Roni Rosenfeld.
    Inferring Property Selection Pressure from Positional Residue Conservation
    Appl. Bioinformatics. 2004; 3(2-3): 167-179.
    Paper: (pubmed, pdf)

  • Elena Eneva, Rose Hoberman, and Lucian Lita.
    Learning Within-Sentence Semantic Coherence
    In 2001 Empirical Methods in Natural Language Processing (EMNLP 2001)
    Paper: (abstract, pdf, ps)     Presentation: (ppt)
[bibtex file]

Non-refereed Publications

  • Rose Hoberman and Roni Rosenfeld.
    Using WordNet to Supplement Corpus Statistics
    Unpublished Manuscript. Dec 2002.
    Paper: (abstract, pdf)

  • James Allan, Hubert Jin, Martin Rajman, Charles Wayne, Daniel Gildea, Victor Lavrenko, Rose Hoberman, and David Caputo.
    Topic-Based Novelty Detection
    Technical report, Center for Language and Speech Processing, Johns Hopkins University, Baltimore, 1999. Summer Workshop Final Report.

[ Back to Rose's Web Page ]