Seungil

Seungil Huh



Email: seungilh at cs.cmu.edu


BIO

I received my Ph.D. from Robotics Institute at Carnegie Mellon University (CMU), under the supervision of Dr. Takeo Kanade and Dr. Stephen E. Fienberg. After several months of postdoctoral research at CMU, now I work at Google Pittsburgh.



RESEARCH

My main research topic is microscopic cell image analysis using computer vision and machine learning algorithms. My goal is to develop new computational algorithms or systems in order to enable a large-scale analysis of bioimage data that can impact biological discovery. My interests also include developing new machine learning algorithms in topic modeling, manifold learning, and dynamic network modeling.


PUBLICATIONS

2013
Apoptosis Detection for Non-adherent Cells in Time-lapse Phase Contrast Microscopy (pdf) (data)(annotation)
S. Huh and T. Kanade
In Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'13), Part II, LNCS 8150, pages 59-66, 2013.
* Young Scientist Award Honorable Mention
Efficient Phase Contrast Microscopy Restoration Applied for Muscle Myotube Detection (pdf) (data)
S. Huh, H. Su, M. Chen, and T. Kanade
In Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'13), Part I, LNCS, 8149, pages 420-427, 2013.
Discriminative Data Transform for Image Feature Extraction and Classi cation (pdf)
Y. Song, W. Cai, S. Huh, M. Chen, T. Kanade, Y. Zhou, and D. Feng
In Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'13), Part II, LNCS 8150, pages 452-459, 2013.
Cell Segmentation in Phase Contrast Microscopy Images via Semi-supervised Classification over Optics-related Features (pdf)
H. Su, Z. Yin, S. Huh, and T. Kanade
Med. Imagi. Anal., 17(7):746-65, 2013.
Cell Segmentation via Spectral Analysis on Phase Retardation Features (pdf)
H. Su, Z, Yin, S. Huh, and T. Kanade
In Proc. IEEE International Symposium on Biomedical Imaging (ISBI'13), pages 1469-1475, 2013.

2012
Apoptosis Detection for Adherent Cell Populations in Time-lapse Phase-contrast Microscopy Images (pdf) (data)(annotation)
S. Huh, D.E.F. Ker, H. Su, and T. Kanade
In Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'12), Part I, LNCS 7510, pages 331-339, 2012.
Phase Contrast Image Restoration Via Dictionary Representation of Diffraction Patterns (pdf)
H. Su, Z, Yin, T. Kanade, and S. Huh
In Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'12), Part III, LNCS 7512, pages 615-622, 2012.
* Young Scientist Award
(Erratum: We had found one term missing in Eqs. (5) and (6), which was fixed in this pdf file.)
Discriminative Topic Modeling based on Manifold Learning (pdf) (codes)
S. Huh and S. Fienberg
ACM Trans. Knowl. Discov. Data, 5, 4, Article 20, 2012.
Mitosis Detection of Hematopoietic Stem Cell Populations in Time-lapse Phase-contrast Microscopy Images (pdf) (data)(annotation)
S. Huh, S. Eom, D.F.E. Ker, L. Weiss, and T. Kanade
In Proc. IEEE International Symposium on Biomedical Imaging (ISBI'12), pages 390-393, 2012.

2011
Automating the Decision Process for Real-Time Adaptive Subculture of Stem Cells (pdf)
D.F.E. Ker, L.E. Weiss, S.N. Junkers, M. Chen, Z. Yin, M.F. Sandboth, S. Huh, S. Eom, R. Bise, E. Osuna-Highley, T. Kanade, and P.G. Campbell
PLoS ONE 6, 11, pg. e27672, 2011.
Automatic Cell Tracking Applied to Analysis of Cell Migration in Wound Healing Assay (pdf)
R. Bise, T. Kanade, Z. Yin, and S. Huh
In Proc. IEEE Engineering in Medicine & Biology Society (EMBS'11), pages 6174-6179, 2011.
Detection of Mitosis within a Stem Cell Population of High Cell Confluence in Phase-Contrast Microscopy Images (pdf)(data)(annotation)
S. Huh and M. Chen
In Proc. IEEE Computer Vision and Pattern Recognition (CVPR'11), pages 1033-1040, 2011. (A journal version is under review.)

Mitosis Detection for Stem Cell Tracking in Phase-Contrast Microscopy Images (pdf)(data)(detailed quantitative results)
S. Huh, S. Eom, R. Bise, Z. Yin, and T. Kanade
In Proc. IEEE International Symposium on Biomedical Imaging (ISBI'11), pages 2121-2127, 2011.

Automated Mitosis Detection of Stem Cell Populations in Phase-Contrast Microscopy Images (pdf)(data)(annotation)
S. Huh, D.F.E. Ker, R. Bise, M. Chen, and T. Kanade
IEEE Trans. Med. Imaging, 30(3):586–596, 2011.

Cell Image Analysis: Algorithms, System and Applications (pdf)
T. Kanade, Z. Yin, R. Bise, S. Huh, S. Eom, M. F. Sandbothe, and M. Chen
In Proc. IEEE Workshop on Applications of Computer Vision (WACV'11), pages 374-381, 2011.

2010
Linear Discriminant Analysis for Signatures (pdf)
S. Huh and D. LEE
IEEE Trans. Neural Networks, 21(12):1990–1996, 2010.
Discriminative Topic Modeling based on Manifold Learning (pdf)
S. Huh and S. E. Fienberg
In Proc. ACM SIGKDD Conference on Knowledge Discovery and Data Mining (SIGKDD'10), pages 653-661, 2010.
* Best Paper Honorable Mention

2009
Efficient Framework for Automated Classification of Subcellular Patterns in Budding Yeast (pdf)
S. Huh, D. Lee, and R. F. Murphy
Cytometry A, 75(11):934-40, 2009.